PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 656aa    MW: 74536.7 Da    PI: 7.9233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445611genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+l+d++ ++++sws++++sf+v+++ ef+++vLp+yFkhsnf+SF+RQLn+YgF+kv+ e+         weF+++ F +gk +ll++i+
     678445611  14 FIAKTYEMLDDKSANSVVSWSHSNKSFIVWNPPEFSRDVLPRYFKHSNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFIRGKPQLLKNIH 101
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     678445611 102 RRKP 105
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.1E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF074981.0E-6623651IPR011112Rho termination factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006353Biological ProcessDNA-templated transcription, termination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MDEAPCSSNS LAPFIAKTYE MLDDKSANSV VSWSHSNKSF IVWNPPEFSR DVLPRYFKHS  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFI RGKPQLLKNI HRRKPVHSHS LPNLASFPPL  120
NEYERNGYKD EVEKLRRDRE SLIMELRSKQ RAHEELTELM GSLMGRVQRV ENRHTKMLST  180
MARTIQRPVL DFISIPEVNH RKRRFPSHDF LSEEASTKDT ETTPQTLIPA IDTSPLAIFN  240
NELLEQLESS LMFWESVAAD LDVDEGLVQH DPSSMELFDS ANCASSPCIS YTQLNVNIPD  300
PTAGIDMNSE PKTSSVGEVG APPEDEGTAN TRGGVNDVFW EQFLTENPGS GDGGEAYWLN  360
TRNVNKLREQ LGSLTPTERT LSEVEGLTWR ERCLTTGYTK KRFRSSALWL SESARGIKWL  420
NFSSLHSHFC KPVHYRRCPD PLFLRGLLFL HQRLFNLAEI ARIPSIRSRA PPHSNRGRVT  480
AEVDLPEDDS RRKSSLSPNK EAILDLFKRI QSSISKGETP SSRKRNMKLN GNNNAPSAES  540
LIEALNTKRG NASSGKGYKS KDTFKNDEDG TQNSTPTRPP SNFSRRSPIP RSTKMEVSTP  600
NLAQEEEPVI EADENSAQTL KFEEMTLQQL KEEAKLRGIK GYSRLRKSDL LELFAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-20910324129Heat shock factor protein 1
5d5v_B1e-20910324129Heat shock factor protein 1
5d5v_D1e-20910324129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.11e-148PREDICTED: heat stress transcription factor A-4a
RefseqXP_011101447.11e-148PREDICTED: heat stress transcription factor A-4a
TrEMBLA0A022QKL31e-142A0A022QKL3_ERYGU; Uncharacterized protein
STRINGSolyc02g072000.2.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-89heat shock transcription factor A4A